PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006129
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 471aa    MW: 52859.4 Da    PI: 6.1589
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-29472PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.5e-09348395448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E ++l+d+v+ +G g W+ I + +     +Rt+ ++k++w+++l
        Lsa006129 348 WTVTEVKKLIDGVAHFGVGKWTHIKKLLFsssVHRTPVDLKDKWRNLL 395
                      **********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-12340397IPR009057Homeodomain-like
PROSITE profilePS5129417.639340399IPR017930Myb domain
SuperFamilySSF466891.0E-15342397IPR009057Homeodomain-like
SMARTSM007173.0E-9344397IPR001005SANT/Myb domain
PfamPF139211.4E-7348399No hitNo description
CDDcd116601.13E-19348396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MNQVEEESLY HSLEEEAIDV DCLLVEPRSD QVSVSSVWCF EEDNIGKCIK TEDASYNLGG  60
SDSNINMECV DTTKLNALDV LPHEVGVENL LTSNGISPCD DYLIDIGYVD HGACIDYVSN  120
EPLHVGNSSS ESPFPMFRNK GNFGIQNSLT DSIPESECQN YFLGNIFGTE SKTVDKFEDF  180
SKSFIDEEED EGNLPLQFAQ TGMELTPFRQ DLITNSAQEH GVGGITHKRS RKPTKRYIDE  240
SSNLTLKNCK KRKEPSSMSK VKMSTVRRVK SQNEVKPKEN IQSSEISFGK AIQVPFISQC  300
PTECEKISLP TTTENQIESF SSGSGDDSET QMMRSMTGGN QRKLHRLWTV TEVKKLIDGV  360
AHFGVGKWTH IKKLLFSSSV HRTPVDLKDK WRNLLKASRA LKGSRVEDEQ KRSQPWRPLP  420
KSILCRVREL ASTYPYPREA NNNSKISKSK FPIVPHVSFS EGIKGNKVPV V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A103XZY71e-146A0A103XZY7_CYNCS; Uncharacterized protein